We present new investigations on the Adjoint Filtering Method (AFM), a proposal for filtering gauge configurations by using adjoint zero modes. This method relies on the existence of the Supersymmetric Zero Mode (SZM), whose density follows the gauge action density for classical configurations. We review how a similar construction on the lattice is implemented based on the overlap operator and test the method against smooth configurations showing a remarkable agreement with the expected densities even when pairs of fractionals instanton/anti-instantons are present and noise is added. Then we explore the application of the method to Monte Carlo generated configurations based on SU(2) gauge group. The tuning of the parameters and quantitative results are explicitly shown for a T 3 × R lattice. We show explicit examples comparing the AFM to the density obtained from the Gradient Flow. The agreement is remarkable for some specific configurations containing fractional instantons with the advantage that the AFM does not modify the underlying structures.